GeMo
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Contents:
Introduction
Main features
Input formats
Data outputs
Data curation and export
Live demo
Citation
Acknowledgements
Troubleshootings and web browser compatibility
Quick Start
Installation requirements
Testing your Perl installation
Testing your Python installation
Download Dataset
Input
Run workflow using create_gemo_input.pl
Explanation of outputs
Visualization and block refinement with GeMo
References
Chromosome painting using non admixed ancestral accessions (VCFHunter)
Installation
Download datasets
Workflow
Identification of private alleles and formatting output for more analysis
Determination of expected read ratio for each ancestral position based on ancestral accessions merged together
Calculation of observed ratio in other accessions
Calculation on sliding of the normalized observed ratio and ancestral blocs
File formatting for GeMo visualization
References
Chromosome painting using TraceAncestor
Installation
Workflow
vcf2gst.pl
prefilter.pl
TraceAncestor.pl
Visualization and block refinement with GeMo
References
PCA analysis
Installation
Dependencies
Datasets
Workflow
Local Install
Prerequisites
Clone the GeMo repository
Install Node dependencies
Create required directories
Launch node server
Configure socket variable
Configure MAMP
GeMo
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