Welcome to GeMo’s documentation!
GeMo is a WebApp to represent Genome Mosaics with current focus on plants. However, GeMo is developed in a generic way it can be also applied to other organisms.
Contents:
- Introduction
- Quick Start
- Chromosome painting using non admixed ancestral accessions (VCFHunter)
- Installation
- Download datasets
- Workflow
- Identification of private alleles and formatting output for more analysis
- Determination of expected read ratio for each ancestral position based on ancestral accessions merged together
- Calculation of observed ratio in other accessions
- Calculation on sliding of the normalized observed ratio and ancestral blocs
- File formatting for GeMo visualization
- References
- Chromosome painting using TraceAncestor
- PCA analysis
- Local Install